pCRM PCE8664

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8664
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
12,556,729
pCRM end:
12,557,586
pCRM len:
858

D.pse fasta:
dpse unflanked
dpse arm:
3,212,646
dpse start:
161,697
dpse end:
162,530
dpse len:
834

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.5

percent iden:
63.9%

D.mel sites:
11
D.pse sites:
8
Aligned sites:
4
Aligned + preserved sites:
7

D.mel site dens:
12.8
D.pse site dens:
9.6
Aligned site dens:
4.7
Aligned + preserved site dens:
8.2

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-27,288
5' gene CG:
CG5461
5' gene:
bun
5' Gap/pair-rule annotation:
BDGP
5' gene insitu:
bun insitu
5' gene flybase:
bun flybase
5' gene start:
12,529,441
5' gene end:
12,445,447
5' gene txl start:
12,528,525

pCRM position 3' gene relative:
-25,071
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG15489
3' gene:
CG15489
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG15489 flybase
3' gene start:
12,582,657
3' gene end:
12,583,560
3' gene txl start:
12,582,657

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: