pCRM PCE8679
| CRM: |
| PCE8679 |
|---|
| Overlaps: |
| slp1 early |
|---|
| Reference: |
| Grossniklaus, 1992 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2L.3C |
|---|
| pCRM start: |
| 3,816,761 |
|---|
| pCRM end: |
| 3,817,475 |
|---|
| pCRM len: |
| 715 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,213,134 |
|---|
| dpse start: |
| 90,999 |
|---|
| dpse end: |
| 89,952 |
|---|
| dpse len: |
| 1,048 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 3.5 |
|---|
|
| percent iden: |
| 63.4% |
|---|
|
| D.mel sites: |
| 9 |
|---|
| D.pse sites: |
| 8 |
|---|
| Aligned sites: |
| 4 |
|---|
| Aligned + preserved sites: |
| 7 |
|---|
|
| D.mel site dens: |
| 12.6 |
|---|
| D.pse site dens: |
| 7.6 |
|---|
| Aligned site dens: |
| 5.6 |
|---|
| Aligned + preserved site dens: |
| 9.8 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -10,785 |
|---|
| 5' gene CG: |
| CG3407 |
|---|
| 5' gene: |
| CG3407 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG3407 flybase |
|---|
| 5' gene start: |
| 3,805,976 |
|---|
| 5' gene end: |
| 3,803,367 |
|---|
| 5' gene txl start: |
| 3,805,899 |
|---|
|
| pCRM position 3' gene relative: |
| -773 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG16738 |
|---|
| 3' gene: |
| slp1 |
|---|
| 3' Gap/pair-rule annotation: |
| BDGP |
|---|
| 3' gene insitu: |
| slp1 insitu |
|---|
| 3' gene flybase: |
| slp1 flybase |
|---|
| 3' gene start: |
| 3,818,248 |
|---|
| 3' gene end: |
| 3,819,706 |
|---|
| 3' gene txl start: |
| 3,818,352 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| slp2 |
|---|
| Gap/pair-rule annotation: |
| BDGP |
|---|
| pCRM relative position: |
| -12,649 |
|---|
