pCRM PCE8681

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Region plotRegion plot detailDotplot
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CRM:
PCE8681
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
10,558,497
pCRM end:
10,559,123
pCRM len:
627

D.pse fasta:
dpse unflanked
dpse arm:
3,212,130
dpse start:
48,395
dpse end:
47,869
dpse len:
527

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.5

percent iden:
56.8%

D.mel sites:
9
D.pse sites:
6
Aligned sites:
4
Aligned + preserved sites:
6

D.mel site dens:
14.4
D.pse site dens:
11.4
Aligned site dens:
6.4
Aligned + preserved site dens:
9.6

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+84964
5' gene CG:
CG32062
5' gene:
CG32062
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG32062 flybase
5' gene start:
10,473,533
5' gene end:
10,550,950
5' gene txl start:
10,475,823

pCRM position 3' gene relative:
+26890
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG14151
3' gene:
CG14151
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG14151 flybase
3' gene start:
10,586,013
3' gene end:
10,585,208
3' gene txl start:
10,585,982

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: