pCRM PCE8682

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8682
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
8,498,395
pCRM end:
8,499,112
pCRM len:
718

D.pse fasta:
dpse unflanked
dpse arm:
3,213,008
dpse start:
477,318
dpse end:
476,416
dpse len:
903

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.5

percent iden:
67.5%

D.mel sites:
10
D.pse sites:
9
Aligned sites:
4
Aligned + preserved sites:
7

D.mel site dens:
13.9
D.pse site dens:
10.0
Aligned site dens:
5.6
Aligned + preserved site dens:
9.7

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+45662
5' gene CG:
CG11354
5' gene:
Lim1
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Lim1 flybase
5' gene start:
8,544,774
5' gene end:
8,496,233
5' gene txl start:
8,544,005

pCRM position 3' gene relative:
+45662
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG11354
3' gene:
Lim1
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Lim1 flybase
3' gene start:
8,544,774
3' gene end:
8,496,233
3' gene txl start:
8,544,005

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: