pCRM PCE8685

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Region plotRegion plot detailDotplot
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CRM:
PCE8685
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
17,208,032
pCRM end:
17,208,749
pCRM len:
718

D.pse fasta:
dpse unflanked
dpse arm:
3,212,381
dpse start:
131,339
dpse end:
132,935
dpse len:
1,597

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.5

percent iden:
57.9%

D.mel sites:
10
D.pse sites:
15
Aligned sites:
2
Aligned + preserved sites:
10

D.mel site dens:
13.9
D.pse site dens:
9.4
Aligned site dens:
2.8
Aligned + preserved site dens:
13.9

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+30066
5' gene CG:
CG15138
5' gene:
beat-IIIc
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
beat-IIIc flybase
5' gene start:
17,238,815
5' gene end:
17,167,892
5' gene txl start:
17,229,646

pCRM position 3' gene relative:
+30066
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG15138
3' gene:
beat-IIIc
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
beat-IIIc flybase
3' gene start:
17,238,815
3' gene end:
17,167,892
3' gene txl start:
17,229,646

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: