pCRM PCE8701

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8701
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
7,383,732
pCRM end:
7,384,465
pCRM len:
734

D.pse fasta:
dpse unflanked
dpse arm:
3,212,234
dpse start:
4,201
dpse end:
3,443
dpse len:
759

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.4

percent iden:
57.4%

D.mel sites:
12
D.pse sites:
10
Aligned sites:
4
Aligned + preserved sites:
7

D.mel site dens:
16.3
D.pse site dens:
13.2
Aligned site dens:
5.4
Aligned + preserved site dens:
9.5

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+11130
5' gene CG:
CG11387
5' gene:
ct
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
ct flybase
5' gene start:
7,372,602
5' gene end:
7,388,542
5' gene txl start:
7,386,597

pCRM position 3' gene relative:
+11130
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG11387
3' gene:
ct
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
ct flybase
3' gene start:
7,372,602
3' gene end:
7,388,542
3' gene txl start:
7,386,597

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: