pCRM PCE8709

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8709
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
15,895,707
pCRM end:
15,896,448
pCRM len:
742

D.pse fasta:
dpse unflanked
dpse arm:
3,212,573
dpse start:
78,822
dpse end:
79,634
dpse len:
813

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.4

percent iden:
68.5%

D.mel sites:
10
D.pse sites:
7
Aligned sites:
4
Aligned + preserved sites:
7

D.mel site dens:
13.5
D.pse site dens:
8.6
Aligned site dens:
5.4
Aligned + preserved site dens:
9.4

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-10,203
5' gene CG:
CG4390
5' gene:
CG4390
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG4390 flybase
5' gene start:
15,885,504
5' gene end:
15,882,156
5' gene txl start:
15,883,110

pCRM position 3' gene relative:
+11741
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG10888
3' gene:
Rh3
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Rh3 flybase
3' gene start:
15,908,189
3' gene end:
15,906,788
3' gene txl start:
15,908,165

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: