pCRM PCE8713

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Region plotRegion plot detailDotplot
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CRM:
PCE8713
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
16,350,279
pCRM end:
16,351,939
pCRM len:
1,661

D.pse fasta:
dpse unflanked
dpse arm:
3,212,184
dpse start:
64,145
dpse end:
62,302
dpse len:
1,844

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.4

percent iden:
63.2%

D.mel sites:
22
D.pse sites:
10
Aligned sites:
6
Aligned + preserved sites:
10

D.mel site dens:
13.2
D.pse site dens:
5.4
Aligned site dens:
3.6
Aligned + preserved site dens:
6.0

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-1,343
5' gene CG:
CG13035
5' gene:
CG13035
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG13035 flybase
5' gene start:
16,348,936
5' gene end:
16,345,440
5' gene txl start:
16,348,936

pCRM position 3' gene relative:
+5385
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG4609
3' gene:
fax
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
fax flybase
3' gene start:
16,357,324
3' gene end:
16,352,663
3' gene txl start:
16,357,215

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: