pCRM PCE8730

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Region plotRegion plot detailDotplot
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CRM:
PCE8730
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
4,149,970
pCRM end:
4,151,033
pCRM len:
1,064

D.pse fasta:
dpse unflanked
dpse arm:
3,212,586
dpse start:
483,047
dpse end:
484,686
dpse len:
1,640

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.3

percent iden:
50.8%

D.mel sites:
13
D.pse sites:
8
Aligned sites:
5
Aligned + preserved sites:
8

D.mel site dens:
12.2
D.pse site dens:
4.9
Aligned site dens:
4.7
Aligned + preserved site dens:
7.5

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+8123
5' gene CG:
CG2955
5' gene:
CG2955
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG2955 flybase
5' gene start:
4,141,847
5' gene end:
4,143,772
5' gene txl start:
4,141,917

pCRM position 3' gene relative:
+7637
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG11767
3' gene:
Or24a
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Or24a flybase
3' gene start:
4,158,670
3' gene end:
4,157,257
3' gene txl start:
4,158,670

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: