pCRM PCE8738

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8738
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
17,841,850
pCRM end:
17,842,791
pCRM len:
942

D.pse fasta:
dpse unflanked
dpse arm:
3,213,217
dpse start:
625,909
dpse end:
624,693
dpse len:
1,217

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.3

percent iden:
71.4%

D.mel sites:
13
D.pse sites:
14
Aligned sites:
5
Aligned + preserved sites:
7

D.mel site dens:
13.8
D.pse site dens:
11.5
Aligned site dens:
5.3
Aligned + preserved site dens:
7.4

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+2896
5' gene CG:
CG7178
5' gene:
wupA
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
wupA flybase
5' gene start:
17,845,687
5' gene end:
17,836,511
5' gene txl start:
17,845,584

pCRM position 3' gene relative:
+2896
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG7178
3' gene:
wupA
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
wupA flybase
3' gene start:
17,845,687
3' gene end:
17,836,511
3' gene txl start:
17,845,584

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: