pCRM PCE8746

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Region plotRegion plot detailDotplot
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CRM:
PCE8746
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
7,878,145
pCRM end:
7,878,985
pCRM len:
841

D.pse fasta:
dpse unflanked
dpse arm:
3,213,126
dpse start:
1,161,915
dpse end:
1,163,566
dpse len:
1,652

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.3

percent iden:
60.0%

D.mel sites:
12
D.pse sites:
9
Aligned sites:
5
Aligned + preserved sites:
6

D.mel site dens:
14.3
D.pse site dens:
5.4
Aligned site dens:
5.9
Aligned + preserved site dens:
7.1

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-3,192
5' gene CG:
CG14739
5' gene:
CG14739
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG14739 flybase
5' gene start:
7,874,953
5' gene end:
7,873,992
5' gene txl start:
7,874,712

pCRM position 3' gene relative:
+9700
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG14740
3' gene:
CG14740
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG14740 flybase
3' gene start:
7,888,685
3' gene end:
7,886,809
3' gene txl start:
7,888,587

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: