pCRM PCE8755
CRM: |
| PCE8755 |
Overlaps: |
| 0 |
Reference: |
| 0 |
|
D.mel fasta: |
| dmel unflanked |
pCRM region: |
| genomic region |
Chrom arm: |
| 3L.3 |
pCRM start: |
| 18,378,400 |
pCRM end: |
| 18,379,089 |
pCRM len: |
| 690 |
|
D.pse fasta: |
| dpse unflanked |
dpse arm: |
| 3,212,212 |
dpse start: |
| 283,990 |
dpse end: |
| 283,133 |
dpse len: |
| 858 |
|
Flanked D.mel fasta: |
| dmel flanked |
Flanked D.pse fasta: |
| dpse flanked |
LAGAN alignment (readable): |
| alignment |
LAGAN alignment (mfa): |
| alignment |
|
D.mel binding site xml: |
| xml |
|
overall site conservation z-score: |
| 3.2 |
|
percent iden: |
| 68.4% |
|
D.mel sites: |
| 9 |
D.pse sites: |
| 7 |
Aligned sites: |
| 4 |
Aligned + preserved sites: |
| 6 |
|
D.mel site dens: |
| 13.0 |
D.pse site dens: |
| 8.2 |
Aligned site dens: |
| 5.8 |
Aligned + preserved site dens: |
| 8.7 |
|
pCRM position relative to 5' gene: |
| upstream |
pCRM position 5' gene relative: |
| -31,118 |
5' gene CG: |
| CG4319 |
5' gene: |
| rpr |
5' Gap/pair-rule annotation: |
| |
5' gene insitu: |
| |
5' gene flybase: |
| rpr flybase |
5' gene start: |
| 18,347,282 |
5' gene end: |
| 18,346,431 |
5' gene txl start: |
| 18,347,114 |
|
pCRM position 3' gene relative: |
| +9727 |
pCRM position relative to 3' gene: |
| downstream |
3' gene CG: |
| CG13701 |
3' gene: |
| skl |
3' Gap/pair-rule annotation: |
| |
3' gene insitu: |
| |
3' gene flybase: |
| skl flybase |
3' gene start: |
| 18,388,816 |
3' gene end: |
| 18,387,434 |
3' gene txl start: |
| 18,388,706 |
|
Additional Gap/pair-rule gene within 20kb: |
| |
Gap/pair-rule annotation: |
| |
pCRM relative position: |
| |