pCRM PCE8757

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8757
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R.3
pCRM start:
9,860,958
pCRM end:
9,861,476
pCRM len:
519

D.pse fasta:
dpse unflanked
dpse arm:
3,212,228
dpse start:
522,275
dpse end:
522,747
dpse len:
473

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.2

percent iden:
52.4%

D.mel sites:
9
D.pse sites:
6
Aligned sites:
4
Aligned + preserved sites:
4

D.mel site dens:
17.3
D.pse site dens:
12.7
Aligned site dens:
7.7
Aligned + preserved site dens:
7.7

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+1722
5' gene CG:
CG10197
5' gene:
kn
5' Gap/pair-rule annotation:
BDGP
5' gene insitu:
kn insitu
5' gene flybase:
kn flybase
5' gene start:
9,862,680
5' gene end:
9,836,372
5' gene txl start:
9,862,165

pCRM position 3' gene relative:
-528
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG12856
3' gene:
CG12856
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG12856 flybase
3' gene start:
9,862,004
3' gene end:
9,862,388
3' gene txl start:
9,862,004

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: