pCRM PCE8760

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8760
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
12,098,612
pCRM end:
12,099,309
pCRM len:
698

D.pse fasta:
dpse unflanked
dpse arm:
3,213,221
dpse start:
112,184
dpse end:
112,900
dpse len:
717

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.2

percent iden:
59.0%

D.mel sites:
10
D.pse sites:
6
Aligned sites:
4
Aligned + preserved sites:
6

D.mel site dens:
14.3
D.pse site dens:
8.4
Aligned site dens:
5.7
Aligned + preserved site dens:
8.6

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+137925
5' gene CG:
CG32659
5' gene:
Ten-a
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Ten-a flybase
5' gene start:
11,960,687
5' gene end:
12,062,836
5' gene txl start:
11,960,884

pCRM position 3' gene relative:
-4,561
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG2577
3' gene:
CG2577
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG2577 flybase
3' gene start:
12,103,870
3' gene end:
12,105,111
3' gene txl start:
12,103,904

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: