pCRM PCE8762

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Region plotRegion plot detailDotplot
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CRM:
PCE8762
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
10,810,188
pCRM end:
10,810,946
pCRM len:
759

D.pse fasta:
dpse unflanked
dpse arm:
3,212,942
dpse start:
704,924
dpse end:
704,162
dpse len:
763

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.2

percent iden:
65.0%

D.mel sites:
10
D.pse sites:
6
Aligned sites:
5
Aligned + preserved sites:
5

D.mel site dens:
13.2
D.pse site dens:
7.9
Aligned site dens:
6.6
Aligned + preserved site dens:
6.6

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+65769
5' gene CG:
CG3837
5' gene:
CG3837
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG3837 flybase
5' gene start:
10,744,419
5' gene end:
10,748,045
5' gene txl start:
10,744,617

pCRM position 3' gene relative:
-29,563
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG14861
3' gene:
CG14861
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG14861 flybase
3' gene start:
10,840,509
3' gene end:
10,841,777
3' gene txl start:
10,840,509

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: