pCRM PCE8769

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Region plotRegion plot detailDotplot
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CRM:
PCE8769
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
21,313,461
pCRM end:
21,314,032
pCRM len:
572

D.pse fasta:
dpse unflanked
dpse arm:
3,212,942
dpse start:
433,276
dpse end:
432,699
dpse len:
578

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.1

percent iden:
70.8%

D.mel sites:
9
D.pse sites:
6
Aligned sites:
3
Aligned + preserved sites:
6

D.mel site dens:
15.7
D.pse site dens:
10.4
Aligned site dens:
5.2
Aligned + preserved site dens:
10.5

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+6885
5' gene CG:
CG5112
5' gene:
CG5112
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG5112 flybase
5' gene start:
21,306,576
5' gene end:
21,308,350
5' gene txl start:
21,306,644

pCRM position 3' gene relative:
-6,267
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG5107
3' gene:
CG5107
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG5107 flybase
3' gene start:
21,320,299
3' gene end:
21,321,005
3' gene txl start:
21,320,303

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: