pCRM PCE8771

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Region plotRegion plot detailDotplot
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CRM:
PCE8771
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
3,678,899
pCRM end:
3,679,911
pCRM len:
1,013

D.pse fasta:
dpse unflanked
dpse arm:
3,213,134
dpse start:
238,750
dpse end:
237,363
dpse len:
1,388

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.1

percent iden:
64.9%

D.mel sites:
13
D.pse sites:
9
Aligned sites:
5
Aligned + preserved sites:
7

D.mel site dens:
12.8
D.pse site dens:
6.5
Aligned site dens:
4.9
Aligned + preserved site dens:
6.9

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+2630
5' gene CG:
CG2808
5' gene:
CG2808
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG2808 flybase
5' gene start:
3,676,269
5' gene end:
3,677,679
5' gene txl start:
3,676,269

pCRM position 3' gene relative:
-2,978
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG10017
3' gene:
CG10017
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG10017 flybase
3' gene start:
3,682,889
3' gene end:
3,684,047
3' gene txl start:
3,682,891

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: