pCRM PCE8772

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Region plotRegion plot detailDotplot
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CRM:
PCE8772
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
14,180,071
pCRM end:
14,181,083
pCRM len:
1,013

D.pse fasta:
dpse unflanked
dpse arm:
3,213,064
dpse start:
38,122
dpse end:
39,115
dpse len:
994

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.1

percent iden:
59.8%

D.mel sites:
13
D.pse sites:
7
Aligned sites:
5
Aligned + preserved sites:
7

D.mel site dens:
12.8
D.pse site dens:
7.0
Aligned site dens:
4.9
Aligned + preserved site dens:
6.9

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-46
5' gene CG:
CG4551
5' gene:
smi35A
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
smi35A flybase
5' gene start:
14,180,025
5' gene end:
14,166,621
5' gene txl start:
14,179,832

pCRM position 3' gene relative:
-64,590
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG15288
3' gene:
wb
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
wb flybase
3' gene start:
14,245,673
3' gene end:
14,310,417
3' gene txl start:
14,245,872

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: