pCRM PCE8775

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Region plotRegion plot detailDotplot
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CRM:
PCE8775
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
4,273,064
pCRM end:
4,273,778
pCRM len:
715

D.pse fasta:
dpse unflanked
dpse arm:
3,213,002
dpse start:
274,014
dpse end:
274,561
dpse len:
548

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.1

percent iden:
50.6%

D.mel sites:
10
D.pse sites:
6
Aligned sites:
4
Aligned + preserved sites:
6

D.mel site dens:
14.0
D.pse site dens:
10.9
Aligned site dens:
5.6
Aligned + preserved site dens:
8.4

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-1,205
5' gene CG:
CG3675
5' gene:
CG3675
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG3675 flybase
5' gene start:
4,271,859
5' gene end:
4,270,607
5' gene txl start:
4,271,859

pCRM position 3' gene relative:
-1,941
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG15427
3' gene:
tutl
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
tutl flybase
3' gene start:
4,275,719
3' gene end:
4,298,276
3' gene txl start:
4,287,793

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: