pCRM PCE8775
CRM: |
| PCE8775 |
Overlaps: |
| 0 |
Reference: |
| 0 |
|
D.mel fasta: |
| dmel unflanked |
pCRM region: |
| genomic region |
Chrom arm: |
| 2L.3C |
pCRM start: |
| 4,273,064 |
pCRM end: |
| 4,273,778 |
pCRM len: |
| 715 |
|
D.pse fasta: |
| dpse unflanked |
dpse arm: |
| 3,213,002 |
dpse start: |
| 274,014 |
dpse end: |
| 274,561 |
dpse len: |
| 548 |
|
Flanked D.mel fasta: |
| dmel flanked |
Flanked D.pse fasta: |
| dpse flanked |
LAGAN alignment (readable): |
| alignment |
LAGAN alignment (mfa): |
| alignment |
|
D.mel binding site xml: |
| xml |
|
overall site conservation z-score: |
| 3.1 |
|
percent iden: |
| 50.6% |
|
D.mel sites: |
| 10 |
D.pse sites: |
| 6 |
Aligned sites: |
| 4 |
Aligned + preserved sites: |
| 6 |
|
D.mel site dens: |
| 14.0 |
D.pse site dens: |
| 10.9 |
Aligned site dens: |
| 5.6 |
Aligned + preserved site dens: |
| 8.4 |
|
pCRM position relative to 5' gene: |
| upstream |
pCRM position 5' gene relative: |
| -1,205 |
5' gene CG: |
| CG3675 |
5' gene: |
| CG3675 |
5' Gap/pair-rule annotation: |
| |
5' gene insitu: |
| |
5' gene flybase: |
| CG3675 flybase |
5' gene start: |
| 4,271,859 |
5' gene end: |
| 4,270,607 |
5' gene txl start: |
| 4,271,859 |
|
pCRM position 3' gene relative: |
| -1,941 |
pCRM position relative to 3' gene: |
| upstream |
3' gene CG: |
| CG15427 |
3' gene: |
| tutl |
3' Gap/pair-rule annotation: |
| |
3' gene insitu: |
| |
3' gene flybase: |
| tutl flybase |
3' gene start: |
| 4,275,719 |
3' gene end: |
| 4,298,276 |
3' gene txl start: |
| 4,287,793 |
|
Additional Gap/pair-rule gene within 20kb: |
| |
Gap/pair-rule annotation: |
| |
pCRM relative position: |
| |