pCRM PCE8781

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Region plotRegion plot detailDotplot
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CRM:
PCE8781
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
8,443,786
pCRM end:
8,444,682
pCRM len:
897

D.pse fasta:
dpse unflanked
dpse arm:
3,213,241
dpse start:
96,194
dpse end:
95,607
dpse len:
588

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.1

percent iden:
44.3%

D.mel sites:
13
D.pse sites:
6
Aligned sites:
5
Aligned + preserved sites:
6

D.mel site dens:
14.5
D.pse site dens:
10.2
Aligned site dens:
5.6
Aligned + preserved site dens:
6.7

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-57,091
5' gene CG:
CG18553
5' gene:
CG18553
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG18553 flybase
5' gene start:
8,386,695
5' gene end:
8,385,792
5' gene txl start:
8,386,695

pCRM position 3' gene relative:
-2,672
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG31355
3' gene:
CG31355
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG31355 flybase
3' gene start:
8,447,354
3' gene end:
8,448,511
3' gene txl start:
8,448,105

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: