pCRM PCE8789
| CRM: |
| PCE8789 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R.3 |
|---|
| pCRM start: |
| 10,412,310 |
|---|
| pCRM end: |
| 10,413,906 |
|---|
| pCRM len: |
| 1,597 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,213,015 |
|---|
| dpse start: |
| 55,086 |
|---|
| dpse end: |
| 53,834 |
|---|
| dpse len: |
| 1,253 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 3.1 |
|---|
|
| percent iden: |
| 49.3% |
|---|
|
| D.mel sites: |
| 19 |
|---|
| D.pse sites: |
| 10 |
|---|
| Aligned sites: |
| 5 |
|---|
| Aligned + preserved sites: |
| 10 |
|---|
|
| D.mel site dens: |
| 11.9 |
|---|
| D.pse site dens: |
| 8.0 |
|---|
| Aligned site dens: |
| 3.1 |
|---|
| Aligned + preserved site dens: |
| 6.3 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -10,722 |
|---|
| 5' gene CG: |
| CG7987 |
|---|
| 5' gene: |
| CG7987 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG7987 flybase |
|---|
| 5' gene start: |
| 10,401,588 |
|---|
| 5' gene end: |
| 10,396,211 |
|---|
| 5' gene txl start: |
| 10,400,613 |
|---|
|
| pCRM position 3' gene relative: |
| -4,296 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG31317 |
|---|
| 3' gene: |
| stumps |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| stumps flybase |
|---|
| 3' gene start: |
| 10,418,202 |
|---|
| 3' gene end: |
| 10,433,822 |
|---|
| 3' gene txl start: |
| 10,418,206 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| CG8066 |
|---|
| Gap/pair-rule annotation: |
| BDGP |
|---|
| pCRM relative position: |
| -17,760 |
|---|
