pCRM PCE8793

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Region plotRegion plot detailDotplot
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CRM:
PCE8793
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
3,422,212
pCRM end:
3,423,115
pCRM len:
904

D.pse fasta:
dpse unflanked
dpse arm:
3,212,253
dpse start:
37,390
dpse end:
35,741
dpse len:
1,650

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.1

percent iden:
68.0%

D.mel sites:
12
D.pse sites:
12
Aligned sites:
3
Aligned + preserved sites:
9

D.mel site dens:
13.3
D.pse site dens:
7.3
Aligned site dens:
3.3
Aligned + preserved site dens:
10.0

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-15,206
5' gene CG:
CG32465
5' gene:
CG32465
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG32465 flybase
5' gene start:
3,407,006
5' gene end:
3,397,030
5' gene txl start:
3,407,006

pCRM position 3' gene relative:
+6367
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG14597
3' gene:
CG14597
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG14597 flybase
3' gene start:
3,429,482
3' gene end:
3,428,840
3' gene txl start:
3,429,482

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: