pCRM PCE8797

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Region plotRegion plot detailDotplot
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CRM:
PCE8797
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
13,547,490
pCRM end:
13,548,287
pCRM len:
798

D.pse fasta:
dpse unflanked
dpse arm:
3,212,338
dpse start:
6,676
dpse end:
7,775
dpse len:
1,100

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.1

percent iden:
57.3%

D.mel sites:
12
D.pse sites:
6
Aligned sites:
5
Aligned + preserved sites:
5

D.mel site dens:
15.0
D.pse site dens:
5.5
Aligned site dens:
6.3
Aligned + preserved site dens:
6.3

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+15199
5' gene CG:
CG7147
5' gene:
kuz
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
kuz flybase
5' gene start:
13,532,291
5' gene end:
13,620,415
5' gene txl start:
13,533,753

pCRM position 3' gene relative:
+15199
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG7147
3' gene:
kuz
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
kuz flybase
3' gene start:
13,532,291
3' gene end:
13,620,415
3' gene txl start:
13,533,753

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: