pCRM PCE8800

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8800
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
18,357,706
pCRM end:
18,358,774
pCRM len:
1,069

D.pse fasta:
dpse unflanked
dpse arm:
3,212,212
dpse start:
305,029
dpse end:
304,124
dpse len:
906

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.0

percent iden:
52.0%

D.mel sites:
12
D.pse sites:
7
Aligned sites:
5
Aligned + preserved sites:
7

D.mel site dens:
11.2
D.pse site dens:
7.7
Aligned site dens:
4.7
Aligned + preserved site dens:
6.5

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-10,424
5' gene CG:
CG4319
5' gene:
rpr
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
rpr flybase
5' gene start:
18,347,282
5' gene end:
18,346,431
5' gene txl start:
18,347,114

pCRM position 3' gene relative:
+30042
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG13701
3' gene:
skl
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
skl flybase
3' gene start:
18,388,816
3' gene end:
18,387,434
3' gene txl start:
18,388,706

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: