pCRM PCE8803

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8803
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
2,814,343
pCRM end:
2,815,671
pCRM len:
1,329

D.pse fasta:
dpse unflanked
dpse arm:
3,212,806
dpse start:
66,291
dpse end:
67,747
dpse len:
1,457

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.0

percent iden:
58.8%

D.mel sites:
16
D.pse sites:
10
Aligned sites:
4
Aligned + preserved sites:
10

D.mel site dens:
12.0
D.pse site dens:
6.9
Aligned site dens:
3.0
Aligned + preserved site dens:
7.5

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-33,584
5' gene CG:
CG2083
5' gene:
CG2083
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG2083 flybase
5' gene start:
2,780,759
5' gene end:
2,768,750
5' gene txl start:
2,780,759

pCRM position 3' gene relative:
+12853
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG14952
3' gene:
CG14952
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG14952 flybase
3' gene start:
2,828,524
3' gene end:
2,828,140
3' gene txl start:
2,828,524

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: