pCRM PCE8804

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Region plotRegion plot detailDotplot
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CRM:
PCE8804
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
14,816,598
pCRM end:
14,819,095
pCRM len:
2,498

D.pse fasta:
dpse unflanked
dpse arm:
3,213,215
dpse start:
664,407
dpse end:
666,736
dpse len:
2,330

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.0

percent iden:
54.3%

D.mel sites:
27
D.pse sites:
11
Aligned sites:
6
Aligned + preserved sites:
11

D.mel site dens:
10.8
D.pse site dens:
4.7
Aligned site dens:
2.4
Aligned + preserved site dens:
4.4

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+6835
5' gene CG:
CG31043
5' gene:
gukh
5' Gap/pair-rule annotation:
BDGP
5' gene insitu:
gukh insitu
5' gene flybase:
gukh flybase
5' gene start:
14,809,763
5' gene end:
14,848,177
5' gene txl start:
14,810,244

pCRM position 3' gene relative:
+6835
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG31043
3' gene:
gukh
3' Gap/pair-rule annotation:
BDGP
3' gene insitu:
gukh insitu
3' gene flybase:
gukh flybase
3' gene start:
14,809,763
3' gene end:
14,848,177
3' gene txl start:
14,810,244

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: