pCRM PCE8805

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Region plotRegion plot detailDotplot
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CRM:
PCE8805
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
7,135,635
pCRM end:
7,136,875
pCRM len:
1,241

D.pse fasta:
dpse unflanked
dpse arm:
3,213,012
dpse start:
251,706
dpse end:
252,763
dpse len:
1,058

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.0

percent iden:
51.1%

D.mel sites:
18
D.pse sites:
8
Aligned sites:
5
Aligned + preserved sites:
8

D.mel site dens:
14.5
D.pse site dens:
7.6
Aligned site dens:
4.0
Aligned + preserved site dens:
6.4

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+10502
5' gene CG:
CG1677
5' gene:
CG1677
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG1677 flybase
5' gene start:
7,146,137
5' gene end:
7,021,465
5' gene txl start:
7,025,091

pCRM position 3' gene relative:
+6676
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG15035
3' gene:
CG15035
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG15035 flybase
3' gene start:
7,143,551
3' gene end:
7,142,076
3' gene txl start:
7,143,476

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: