pCRM PCE8807

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Region plotRegion plot detailDotplot
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CRM:
PCE8807
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
7,787,714
pCRM end:
7,788,868
pCRM len:
1,155

D.pse fasta:
dpse unflanked
dpse arm:
3,212,184
dpse start:
470,254
dpse end:
471,531
dpse len:
1,278

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.0

percent iden:
60.4%

D.mel sites:
17
D.pse sites:
9
Aligned sites:
4
Aligned + preserved sites:
9

D.mel site dens:
14.7
D.pse site dens:
7.0
Aligned site dens:
3.5
Aligned + preserved site dens:
7.8

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+1457
5' gene CG:
CG17888
5' gene:
Pdp1
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Pdp1 flybase
5' gene start:
7,786,115
5' gene end:
7,773,863
5' gene txl start:
7,786,115

pCRM position 3' gene relative:
+1457
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG17888
3' gene:
Pdp1
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Pdp1 flybase
3' gene start:
7,790,325
3' gene end:
7,773,863
3' gene txl start:
7,790,267

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: