pCRM PCE8810

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Region plotRegion plot detailDotplot
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CRM:
PCE8810
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R.3
pCRM start:
7,839,090
pCRM end:
7,839,843
pCRM len:
754

D.pse fasta:
dpse unflanked
dpse arm:
3,213,122
dpse start:
1,962,329
dpse end:
1,961,645
dpse len:
685

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.0

percent iden:
57.7%

D.mel sites:
11
D.pse sites:
7
Aligned sites:
4
Aligned + preserved sites:
6

D.mel site dens:
14.6
D.pse site dens:
10.2
Aligned site dens:
5.3
Aligned + preserved site dens:
8.0

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+12266
5' gene CG:
CG12374
5' gene:
CG12374
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG12374 flybase
5' gene start:
7,826,824
5' gene end:
7,828,538
5' gene txl start:
7,826,865

pCRM position 3' gene relative:
-5,414
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG17579
3' gene:
sca
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
sca flybase
3' gene start:
7,845,257
3' gene end:
7,865,804
3' gene txl start:
7,845,576

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: