pCRM PCE8815

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Region plotRegion plot detailDotplot
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CRM:
PCE8815
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
4,129,758
pCRM end:
4,130,519
pCRM len:
762

D.pse fasta:
dpse unflanked
dpse arm:
3,212,586
dpse start:
455,020
dpse end:
455,923
dpse len:
904

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.0

percent iden:
68.9%

D.mel sites:
14
D.pse sites:
6
Aligned sites:
4
Aligned + preserved sites:
6

D.mel site dens:
18.4
D.pse site dens:
6.6
Aligned site dens:
5.2
Aligned + preserved site dens:
7.9

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+15469
5' gene CG:
CG4099
5' gene:
Sr-CI
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Sr-CI flybase
5' gene start:
4,114,289
5' gene end:
4,116,571
5' gene txl start:
4,114,328

pCRM position 3' gene relative:
-11,328
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG2955
3' gene:
CG2955
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG2955 flybase
3' gene start:
4,141,847
3' gene end:
4,143,772
3' gene txl start:
4,141,917

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: