pCRM PCE8836

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8836
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
18,855,255
pCRM end:
18,855,935
pCRM len:
681

D.pse fasta:
dpse unflanked
dpse arm:
3,212,586
dpse start:
7,554
dpse end:
6,876
dpse len:
679

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.9

percent iden:
62.1%

D.mel sites:
10
D.pse sites:
5
Aligned sites:
3
Aligned + preserved sites:
5

D.mel site dens:
14.7
D.pse site dens:
7.4
Aligned site dens:
4.4
Aligned + preserved site dens:
7.3

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+3404
5' gene CG:
CG10619
5' gene:
tup
5' Gap/pair-rule annotation:
BDGP
5' gene insitu:
tup insitu
5' gene flybase:
tup flybase
5' gene start:
18,859,339
5' gene end:
18,837,597
5' gene txl start:
18,858,878

pCRM position 3' gene relative:
+3404
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG10619
3' gene:
tup
3' Gap/pair-rule annotation:
BDGP
3' gene insitu:
tup insitu
3' gene flybase:
tup flybase
3' gene start:
18,859,339
3' gene end:
18,837,597
3' gene txl start:
18,858,878

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: