pCRM PCE8838
| CRM: |
| PCE8838 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2R.3 |
|---|
| pCRM start: |
| 19,345,433 |
|---|
| pCRM end: |
| 19,346,672 |
|---|
| pCRM len: |
| 1,240 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,213,007 |
|---|
| dpse start: |
| 39,539 |
|---|
| dpse end: |
| 38,408 |
|---|
| dpse len: |
| 1,132 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 2.9 |
|---|
|
| percent iden: |
| 55.7% |
|---|
|
| D.mel sites: |
| 17 |
|---|
| D.pse sites: |
| 6 |
|---|
| Aligned sites: |
| 6 |
|---|
| Aligned + preserved sites: |
| 6 |
|---|
|
| D.mel site dens: |
| 13.7 |
|---|
| D.pse site dens: |
| 5.3 |
|---|
| Aligned site dens: |
| 4.8 |
|---|
| Aligned + preserved site dens: |
| 4.8 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| +6348 |
|---|
| 5' gene CG: |
| CG3394 |
|---|
| 5' gene: |
| CG3394 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG3394 flybase |
|---|
| 5' gene start: |
| 19,339,085 |
|---|
| 5' gene end: |
| 19,341,691 |
|---|
| 5' gene txl start: |
| 19,339,217 |
|---|
|
| pCRM position 3' gene relative: |
| -2,777 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG3401 |
|---|
| 3' gene: |
| betaTub60D |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| betaTub60D flybase |
|---|
| 3' gene start: |
| 19,349,449 |
|---|
| 3' gene end: |
| 19,356,671 |
|---|
| 3' gene txl start: |
| 19,349,649 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
