pCRM PCE8839

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Region plotRegion plot detailDotplot
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CRM:
PCE8839
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
18,396,715
pCRM end:
18,397,508
pCRM len:
794

D.pse fasta:
dpse unflanked
dpse arm:
3,212,212
dpse start:
261,753
dpse end:
260,885
dpse len:
869

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.9

percent iden:
65.7%

D.mel sites:
10
D.pse sites:
7
Aligned sites:
4
Aligned + preserved sites:
6

D.mel site dens:
12.6
D.pse site dens:
8.1
Aligned site dens:
5.0
Aligned + preserved site dens:
7.6

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-7,899
5' gene CG:
CG13701
5' gene:
skl
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
skl flybase
5' gene start:
18,388,816
5' gene end:
18,387,434
5' gene txl start:
18,388,706

pCRM position 3' gene relative:
+11687
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG32196
3' gene:
CG32196
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG32196 flybase
3' gene start:
18,409,195
3' gene end:
18,407,839
3' gene txl start:
18,409,168

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: