pCRM PCE8840

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8840
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
3,401,018
pCRM end:
3,402,260
pCRM len:
1,243

D.pse fasta:
dpse unflanked
dpse arm:
3,212,397
dpse start:
216,411
dpse end:
214,946
dpse len:
1,466

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.9

percent iden:
58.2%

D.mel sites:
14
D.pse sites:
10
Aligned sites:
4
Aligned + preserved sites:
9

D.mel site dens:
11.3
D.pse site dens:
6.8
Aligned site dens:
3.2
Aligned + preserved site dens:
7.2

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+68044
5' gene CG:
CG2872
5' gene:
AlstR
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
AlstR flybase
5' gene start:
3,332,974
5' gene end:
3,413,226
5' gene txl start:
3,393,475

pCRM position 3' gene relative:
+68044
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG2872
3' gene:
AlstR
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
AlstR flybase
3' gene start:
3,332,974
3' gene end:
3,413,226
3' gene txl start:
3,393,475

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: