pCRM PCE8850

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8850
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
2,013,055
pCRM end:
2,013,869
pCRM len:
815

D.pse fasta:
dpse unflanked
dpse arm:
3,212,968
dpse start:
36,117
dpse end:
35,272
dpse len:
846

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.9

percent iden:
63.9%

D.mel sites:
11
D.pse sites:
7
Aligned sites:
4
Aligned + preserved sites:
6

D.mel site dens:
13.5
D.pse site dens:
8.3
Aligned site dens:
4.9
Aligned + preserved site dens:
7.4

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+2861
5' gene CG:
CG15361
5' gene:
CG15361
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG15361 flybase
5' gene start:
2,010,194
5' gene end:
2,010,520
5' gene txl start:
2,010,194

pCRM position 3' gene relative:
-11,838
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG4238
3' gene:
CG4238
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG4238 flybase
3' gene start:
2,025,707
3' gene end:
2,031,603
3' gene txl start:
2,025,707

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: