pCRM PCE8852

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8852
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
25,333,346
pCRM end:
25,334,048
pCRM len:
703

D.pse fasta:
dpse unflanked
dpse arm:
3,212,384
dpse start:
382,859
dpse end:
383,784
dpse len:
926

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.8

percent iden:
74.5%

D.mel sites:
10
D.pse sites:
7
Aligned sites:
4
Aligned + preserved sites:
5

D.mel site dens:
14.2
D.pse site dens:
7.6
Aligned site dens:
5.7
Aligned + preserved site dens:
7.1

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+2414
5' gene CG:
CG2014
5' gene:
CG2014
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG2014 flybase
5' gene start:
25,330,932
5' gene end:
25,331,571
5' gene txl start:
25,330,932

pCRM position 3' gene relative:
-37,426
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG1897
3' gene:
Dr
3' Gap/pair-rule annotation:
BDGP
3' gene insitu:
Dr insitu
3' gene flybase:
Dr flybase
3' gene start:
25,371,474
3' gene end:
25,380,373
3' gene txl start:
25,371,723

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: