pCRM PCE8856

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8856
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
14,876,621
pCRM end:
14,877,515
pCRM len:
895

D.pse fasta:
dpse unflanked
dpse arm:
3,213,243
dpse start:
43,168
dpse end:
44,234
dpse len:
1,067

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.8

percent iden:
73.0%

D.mel sites:
10
D.pse sites:
5
Aligned sites:
5
Aligned + preserved sites:
5

D.mel site dens:
11.2
D.pse site dens:
4.7
Aligned site dens:
5.6
Aligned + preserved site dens:
5.6

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-14,822
5' gene CG:
CG4478
5' gene:
Mst35Bb
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Mst35Bb flybase
5' gene start:
14,861,799
5' gene end:
14,860,184
5' gene txl start:
14,860,771

pCRM position 3' gene relative:
+10336
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG15277
3' gene:
CG15277
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG15277 flybase
3' gene start:
14,887,851
3' gene end:
14,886,604
3' gene txl start:
14,887,851

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: