pCRM PCE8859

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8859
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
6,450,885
pCRM end:
6,451,851
pCRM len:
967

D.pse fasta:
dpse unflanked
dpse arm:
3,212,786
dpse start:
209,624
dpse end:
210,556
dpse len:
933

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.8

percent iden:
60.0%

D.mel sites:
14
D.pse sites:
7
Aligned sites:
4
Aligned + preserved sites:
7

D.mel site dens:
14.5
D.pse site dens:
7.5
Aligned site dens:
4.1
Aligned + preserved site dens:
7.2

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+10894
5' gene CG:
CG17117
5' gene:
hth
5' Gap/pair-rule annotation:
FlyBase
5' gene insitu:
5' gene flybase:
hth flybase
5' gene start:
6,439,991
5' gene end:
6,335,579
5' gene txl start:
6,438,739

pCRM position 3' gene relative:
+10894
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG17117
3' gene:
hth
3' Gap/pair-rule annotation:
FlyBase
3' gene insitu:
3' gene flybase:
hth flybase
3' gene start:
6,439,991
3' gene end:
6,335,579
3' gene txl start:
6,438,739

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: