pCRM PCE8866
| CRM: |
| PCE8866 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2L.3C |
|---|
| pCRM start: |
| 4,009,211 |
|---|
| pCRM end: |
| 4,009,929 |
|---|
| pCRM len: |
| 719 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,586 |
|---|
| dpse start: |
| 279,714 |
|---|
| dpse end: |
| 280,479 |
|---|
| dpse len: |
| 766 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 2.8 |
|---|
|
| percent iden: |
| 64.1% |
|---|
|
| D.mel sites: |
| 9 |
|---|
| D.pse sites: |
| 7 |
|---|
| Aligned sites: |
| 4 |
|---|
| Aligned + preserved sites: |
| 5 |
|---|
|
| D.mel site dens: |
| 12.5 |
|---|
| D.pse site dens: |
| 9.1 |
|---|
| Aligned site dens: |
| 5.6 |
|---|
| Aligned + preserved site dens: |
| 7.0 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| +8940 |
|---|
| 5' gene CG: |
| CG10039 |
|---|
| 5' gene: |
| CG10039 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG10039 flybase |
|---|
| 5' gene start: |
| 4,000,271 |
|---|
| 5' gene end: |
| 4,001,568 |
|---|
| 5' gene txl start: |
| 4,000,271 |
|---|
|
| pCRM position 3' gene relative: |
| -14,018 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG12676 |
|---|
| 3' gene: |
| ed |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| ed flybase |
|---|
| 3' gene start: |
| 4,023,947 |
|---|
| 3' gene end: |
| 4,107,628 |
|---|
| 3' gene txl start: |
| 4,025,244 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
