pCRM PCE8871

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8871
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
15,130,520
pCRM end:
15,131,250
pCRM len:
731

D.pse fasta:
dpse unflanked
dpse arm:
3,213,202
dpse start:
206,595
dpse end:
205,943
dpse len:
653

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.8

percent iden:
51.3%

D.mel sites:
12
D.pse sites:
5
Aligned sites:
4
Aligned + preserved sites:
5

D.mel site dens:
16.4
D.pse site dens:
7.7
Aligned site dens:
5.5
Aligned + preserved site dens:
6.8

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+230
5' gene CG:
CG9176
5' gene:
cngl
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
cngl flybase
5' gene start:
15,131,480
5' gene end:
15,120,619
5' gene txl start:
15,131,353

pCRM position 3' gene relative:
+230
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG9176
3' gene:
cngl
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
cngl flybase
3' gene start:
15,131,480
3' gene end:
15,120,619
3' gene txl start:
15,131,353

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: