pCRM PCE8872

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8872
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
5,138,812
pCRM end:
5,139,545
pCRM len:
734

D.pse fasta:
dpse unflanked
dpse arm:
3,212,422
dpse start:
371,508
dpse end:
372,316
dpse len:
809

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.7

percent iden:
61.0%

D.mel sites:
11
D.pse sites:
5
Aligned sites:
4
Aligned + preserved sites:
5

D.mel site dens:
15.0
D.pse site dens:
6.2
Aligned site dens:
5.4
Aligned + preserved site dens:
6.8

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+3096
5' gene CG:
CG18251
5' gene:
Msp-300
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Msp-300 flybase
5' gene start:
5,135,716
5' gene end:
5,150,835
5' gene txl start:
5,135,901

pCRM position 3' gene relative:
+3096
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG18251
3' gene:
Msp-300
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Msp-300 flybase
3' gene start:
5,135,716
3' gene end:
5,150,835
3' gene txl start:
5,135,901

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: