pCRM PCE8875

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8875
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
15,955,901
pCRM end:
15,956,639
pCRM len:
739

D.pse fasta:
dpse unflanked
dpse arm:
3,212,573
dpse start:
130,723
dpse end:
131,575
dpse len:
853

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.7

percent iden:
67.7%

D.mel sites:
10
D.pse sites:
6
Aligned sites:
4
Aligned + preserved sites:
5

D.mel site dens:
13.5
D.pse site dens:
7.0
Aligned site dens:
5.4
Aligned + preserved site dens:
6.8

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+9103
5' gene CG:
CG31208
5' gene:
Gr92a
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Gr92a flybase
5' gene start:
15,946,798
5' gene end:
15,947,839
5' gene txl start:
15,946,798

pCRM position 3' gene relative:
-38,535
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG5023
3' gene:
CG5023
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG5023 flybase
3' gene start:
15,995,174
3' gene end:
16,000,614
3' gene txl start:
15,995,253

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: