pCRM PCE8876

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8876
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
1,883,948
pCRM end:
1,884,812
pCRM len:
865

D.pse fasta:
dpse unflanked
dpse arm:
3,213,053
dpse start:
820,304
dpse end:
820,917
dpse len:
614

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.7

percent iden:
45.3%

D.mel sites:
10
D.pse sites:
6
Aligned sites:
4
Aligned + preserved sites:
6

D.mel site dens:
11.6
D.pse site dens:
9.8
Aligned site dens:
4.6
Aligned + preserved site dens:
6.9

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-5,664
5' gene CG:
CG1887
5' gene:
CG1887
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG1887 flybase
5' gene start:
1,878,284
5' gene end:
1,874,508
5' gene txl start:
1,878,249

pCRM position 3' gene relative:
-17,231
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG13925
3' gene:
CG13925
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG13925 flybase
3' gene start:
1,902,043
3' gene end:
1,902,730
3' gene txl start:
1,902,043

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: