pCRM PCE8881

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8881
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
15,147,956
pCRM end:
15,148,982
pCRM len:
1,027

D.pse fasta:
dpse unflanked
dpse arm:
3,213,050
dpse start:
1,134,664
dpse end:
1,135,542
dpse len:
879

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.7

percent iden:
54.9%

D.mel sites:
14
D.pse sites:
7
Aligned sites:
4
Aligned + preserved sites:
7

D.mel site dens:
13.6
D.pse site dens:
8.0
Aligned site dens:
3.9
Aligned + preserved site dens:
6.8

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-35,453
5' gene CG:
CG7011
5' gene:
CG7011
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG7011 flybase
5' gene start:
15,112,503
5' gene end:
15,109,747
5' gene txl start:
15,112,374

pCRM position 3' gene relative:
-7,740
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG6888
3' gene:
CG6888
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG6888 flybase
3' gene start:
15,156,722
3' gene end:
15,157,471
3' gene txl start:
15,156,804

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: