pCRM PCE8890

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Region plotRegion plot detailDotplot
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CRM:
PCE8890
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
18,310,580
pCRM end:
18,311,489
pCRM len:
910

D.pse fasta:
dpse unflanked
dpse arm:
3,212,992
dpse start:
65,851
dpse end:
64,759
dpse len:
1,093

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.6

percent iden:
64.2%

D.mel sites:
14
D.pse sites:
8
Aligned sites:
4
Aligned + preserved sites:
6

D.mel site dens:
15.4
D.pse site dens:
7.3
Aligned site dens:
4.4
Aligned + preserved site dens:
6.6

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+13285
5' gene CG:
CG6500
5' gene:
Bx
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Bx flybase
5' gene start:
18,297,295
5' gene end:
18,302,675
5' gene txl start:
18,297,370

pCRM position 3' gene relative:
+32043
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG15040
3' gene:
CG15040
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG15040 flybase
3' gene start:
18,343,532
3' gene end:
18,337,660
3' gene txl start:
18,343,532

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: