pCRM PCE8899

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Region plotRegion plot detailDotplot
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CRM:
PCE8899
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
13,750,875
pCRM end:
13,751,955
pCRM len:
1,081

D.pse fasta:
dpse unflanked
dpse arm:
3,212,623
dpse start:
109,283
dpse end:
108,193
dpse len:
1,091

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.6

percent iden:
59.2%

D.mel sites:
17
D.pse sites:
7
Aligned sites:
4
Aligned + preserved sites:
7

D.mel site dens:
15.7
D.pse site dens:
6.4
Aligned site dens:
3.7
Aligned + preserved site dens:
6.5

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+20007
5' gene CG:
CG32616
5' gene:
Ste12DOR
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Ste12DOR flybase
5' gene start:
13,730,868
5' gene end:
13,731,441
5' gene txl start:
13,731,039

pCRM position 3' gene relative:
+40100
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG32605
3' gene:
CG32605
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG32605 flybase
3' gene start:
13,792,055
3' gene end:
13,777,551
3' gene txl start:
13,792,055

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: