pCRM PCE8900

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8900
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R.3
pCRM start:
20,176,889
pCRM end:
20,177,557
pCRM len:
669

D.pse fasta:
dpse unflanked
dpse arm:
3,212,581
dpse start:
43,318
dpse end:
44,084
dpse len:
767

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.6

percent iden:
65.9%

D.mel sites:
10
D.pse sites:
4
Aligned sites:
4
Aligned + preserved sites:
4

D.mel site dens:
14.9
D.pse site dens:
5.2
Aligned site dens:
6.0
Aligned + preserved site dens:
6.0

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+3888
5' gene CG:
CG30430
5' gene:
CG30430
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG30430 flybase
5' gene start:
20,173,001
5' gene end:
20,173,482
5' gene txl start:
20,173,180

pCRM position 3' gene relative:
+5554
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG16778
3' gene:
Tkr
3' Gap/pair-rule annotation:
BDGP
3' gene insitu:
Tkr insitu
3' gene flybase:
Tkr flybase
3' gene start:
20,183,111
3' gene end:
20,129,349
3' gene txl start:
20,140,033

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: