pCRM PCE8907
| CRM: |
| PCE8907 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| X.3 |
|---|
| pCRM start: |
| 15,344,721 |
|---|
| pCRM end: |
| 15,345,398 |
|---|
| pCRM len: |
| 678 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,830 |
|---|
| dpse start: |
| 83,274 |
|---|
| dpse end: |
| 83,925 |
|---|
| dpse len: |
| 652 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 2.6 |
|---|
|
| percent iden: |
| 57.1% |
|---|
|
| D.mel sites: |
| 9 |
|---|
| D.pse sites: |
| 4 |
|---|
| Aligned sites: |
| 4 |
|---|
| Aligned + preserved sites: |
| 4 |
|---|
|
| D.mel site dens: |
| 13.3 |
|---|
| D.pse site dens: |
| 6.1 |
|---|
| Aligned site dens: |
| 5.9 |
|---|
| Aligned + preserved site dens: |
| 5.9 |
|---|
|
| pCRM position relative to 5' gene: |
| within_intron |
|---|
| pCRM position 5' gene relative: |
| +12833 |
|---|
| 5' gene CG: |
| CG9224 |
|---|
| 5' gene: |
| sog |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| sog flybase |
|---|
| 5' gene start: |
| 15,357,554 |
|---|
| 5' gene end: |
| 15,335,583 |
|---|
| 5' gene txl start: |
| 15,356,738 |
|---|
|
| pCRM position 3' gene relative: |
| -7,508 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG32586 |
|---|
| 3' gene: |
| CG32586 |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| CG32586 flybase |
|---|
| 3' gene start: |
| 15,352,906 |
|---|
| 3' gene end: |
| 15,353,581 |
|---|
| 3' gene txl start: |
| 15,353,221 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
