pCRM PCE8909
CRM: |
| PCE8909 |
Overlaps: |
| 0 |
Reference: |
| 0 |
|
D.mel fasta: |
| dmel unflanked |
pCRM region: |
| genomic region |
Chrom arm: |
| X.3 |
pCRM start: |
| 8,016,087 |
pCRM end: |
| 8,016,823 |
pCRM len: |
| 737 |
|
D.pse fasta: |
| dpse unflanked |
dpse arm: |
| 3,213,138 |
dpse start: |
| 1,122,917 |
dpse end: |
| 1,122,017 |
dpse len: |
| 901 |
|
Flanked D.mel fasta: |
| dmel flanked |
Flanked D.pse fasta: |
| dpse flanked |
LAGAN alignment (readable): |
| alignment |
LAGAN alignment (mfa): |
| alignment |
|
D.mel binding site xml: |
| xml |
|
overall site conservation z-score: |
| 2.6 |
|
percent iden: |
| 71.9% |
|
D.mel sites: |
| 11 |
D.pse sites: |
| 7 |
Aligned sites: |
| 0 |
Aligned + preserved sites: |
| 6 |
|
D.mel site dens: |
| 14.9 |
D.pse site dens: |
| 7.8 |
Aligned site dens: |
| 0 |
Aligned + preserved site dens: |
| 8.1 |
|
pCRM position relative to 5' gene: |
| downstream |
pCRM position 5' gene relative: |
| +3692 |
5' gene CG: |
| CG1636 |
5' gene: |
| CG1636 |
5' Gap/pair-rule annotation: |
| |
5' gene insitu: |
| |
5' gene flybase: |
| CG1636 flybase |
5' gene start: |
| 8,012,395 |
5' gene end: |
| 8,014,363 |
5' gene txl start: |
| 8,012,493 |
|
pCRM position 3' gene relative: |
| +51801 |
pCRM position relative to 3' gene: |
| downstream |
3' gene CG: |
| CG2302 |
3' gene: |
| nAcRalpha-7E |
3' Gap/pair-rule annotation: |
| |
3' gene insitu: |
| |
3' gene flybase: |
| nAcRalpha-7E flybase |
3' gene start: |
| 8,068,624 |
3' gene end: |
| 8,021,902 |
3' gene txl start: |
| 8,068,349 |
|
Additional Gap/pair-rule gene within 20kb: |
| |
Gap/pair-rule annotation: |
| |
pCRM relative position: |
| |