pCRM PCE8909

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Region plotRegion plot detailDotplot
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CRM:
PCE8909
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
8,016,087
pCRM end:
8,016,823
pCRM len:
737

D.pse fasta:
dpse unflanked
dpse arm:
3,213,138
dpse start:
1,122,917
dpse end:
1,122,017
dpse len:
901

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.6

percent iden:
71.9%

D.mel sites:
11
D.pse sites:
7
Aligned sites:
0
Aligned + preserved sites:
6

D.mel site dens:
14.9
D.pse site dens:
7.8
Aligned site dens:
0
Aligned + preserved site dens:
8.1

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+3692
5' gene CG:
CG1636
5' gene:
CG1636
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG1636 flybase
5' gene start:
8,012,395
5' gene end:
8,014,363
5' gene txl start:
8,012,493

pCRM position 3' gene relative:
+51801
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG2302
3' gene:
nAcRalpha-7E
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
nAcRalpha-7E flybase
3' gene start:
8,068,624
3' gene end:
8,021,902
3' gene txl start:
8,068,349

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: