pCRM PCE8949

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8949
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R.3
pCRM start:
7,161,647
pCRM end:
7,162,781
pCRM len:
1,135

D.pse fasta:
dpse unflanked
dpse arm:
3,213,226
dpse start:
245,757
dpse end:
244,560
dpse len:
1,198

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
2.2

percent iden:
55.5%

D.mel sites:
13
D.pse sites:
6
Aligned sites:
4
Aligned + preserved sites:
6

D.mel site dens:
11.5
D.pse site dens:
5.0
Aligned site dens:
3.5
Aligned + preserved site dens:
5.3

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+20804
5' gene CG:
CG30040
5' gene:
jeb
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
jeb flybase
5' gene start:
7,183,585
5' gene end:
7,155,334
5' gene txl start:
7,182,773

pCRM position 3' gene relative:
+20804
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG30040
3' gene:
jeb
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
jeb flybase
3' gene start:
7,183,585
3' gene end:
7,155,334
3' gene txl start:
7,182,773

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: